miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|76856838|gb|DV147831.1|DV147831 CAGCCACCGGAAGAATCCAAGCAAGATTCGGATTCAATTTCGGAACCAAAAAAGCTCCACCACCACCCCCAAAATCACCC
CCAAAGCAATCAAAATTCGGATTCAATTTCACCAAAAAATCTCCACCACCAGCAAAAAAATCACTCCCAAAACAATCTGC
CGGAGACCGTCTAGTCTGGTTCCCCGGTGCAAACCCACCGGAATGGCTCGACGGGACAATGATCGGAGACAGAGGGTTCG
ACCCGTTCGGGTTGGGGAAACCCGCGGAGTACTTGCAATATGATTTGGATTCGTTGGACCAGAACTTGGCGAAGAATCTC
GCCGGTGAAATTATCGGGACACGTGTGGAGGATGCGACGGTGAATCCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGG
GCTGCAGAGGTTTAGAGAATGTGAAGTGATTCATGGAAGATGGGCGATGTTGGGGACTCTTGGTGCCATTGCTGTTGAAG
CTCTTACTGGTGTTTCTTGGCAAGATGCTGGAAAGGTAGAATTAGTTGAAGGGTCATCCTACCTTGGGCAGCCATTGCCA
TTTAGCTTGACAACATTGATATGGATAGAGGTTCTAGTAATTGG




Most similar to sp|Q9S7W1|CB4C_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1
           SV=1
          Length = 276

 Score =  285 bits (729), Expect = 2e-76
 Identities = 140/199 (70%), Positives = 152/199 (76%)
 Frame = +3

Query: 6   TGRIQARFGFNFGTXXXXXXXXXXXXXXXXFGFNFTXXXXXXXXXXXXXXXAGDRLVWFP 185
           TGR+QARFGF+FG                                       GDRLVWFP
Sbjct: 24  TGRVQARFGFSFGKKKPAPPPKKSRQVQDD----------------------GDRLVWFP 61

Query: 186 GANPPEWLDGTMIGDRGFDPFGLGKPAEYLQYDLDSLDQNLAKNLAGEIIGTRVEDATVN 365
           GANPPEWLDG+MIGDRGFDPFGLGKPAEYLQYD D LDQNLAKN+AG+IIG   E + + 
Sbjct: 62  GANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIK 121

Query: 366 PTPFQPYTEVFGLQRFRECEVIHGRWAMLGTLGAIAVEALTGVSWQDAGKVELVEGSSYL 545
           PTPFQPYTEVFG+QRFRECE+IHGRWAMLGTLGAIAVEALTG++WQDAGKVELVEGSSYL
Sbjct: 122 PTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYL 181

Query: 546 GQPLPFSLTTLIWIEVLVI 602
           GQPLPFSLTTLIWIEVLV+
Sbjct: 182 GQPLPFSLTTLIWIEVLVV 200